preparePromoterAnnotation()
Prepares promoter annotation from a gtf or txdb
proActiv()
Estimates promoter counts and activity in a single command
integrateProactiv()
Integrate multiple proActiv runs
getAlternativePromoters()
Identifies alternative promoters.
boxplotPromoters()
Visualizes promoter activity and gene expression with boxplots
plotPCA()
Performs principal component analysis
plotHeatmap()
Visualizes heatmap of features for samples
promoterAnnotation.gencode.v34.subset
Promoter annotation for Gencode.v34 (subset)