write GRangeslist into GTF file

Source: R/readWrite.R

Write annotation GRangesList into a GTF file

writeToGTF(annotation, file, geneIDs = NULL)

Arguments

annotation

a GRangesList object
file

the output gtf file name
geneIDs

an optional dataframe of geneIDs (column 2) with the corresponding transcriptIDs (column 1)

Value

gtf a GTF dataframe

Examples

outputGtfFile <- tempfile()
gr <- readRDS(system.file("extdata",
    "annotationGranges_txdbGrch38_91_chr9_1_1000000.rds",
    package = "bambu"
))
writeToGTF(gr, outputGtfFile)