transcript to gene expression

Source: R/transcriptToGeneExpression.R

Reduce transcript expression to gene expression

transcriptToGeneExpression(se)

Arguments

se

a summarizedExperiment object from bambu

Value

A SummarizedExperiment object

Examples

se <- readRDS(system.file("extdata",
    "seOutput_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds",
    package = "bambu"
))
transcriptToGeneExpression(se)
#> Error in `:=`(TXNAME, "Incomaptible"): Check that is.data.table(DT) == TRUE. Otherwise, := and `:=`(...) are defined for use in j, once only and in particular ways. See help(":=").